MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 4,826
rRNA: 10
Repeat region:
tmRNA: 1
tRNA: 89
misc RNA:
Total features: 4,926
Total number of protein coding genes annotated/found:
4,826
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Items 1 - 20
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Molecule ^
PID/GenBank ID *
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5015|JADGKR010000009.1
SEQF5015_04926
Genome Viewer
NA
AA
1500/500
173045-174544
Low-affinity inorganic phosphate transporter 1
SEQF5015|JADGKR010000009.1
SEQF5015_04925
Genome Viewer
NA
AA
1203/401
172813-171611
putative protein
SEQF5015|JADGKR010000009.1
SEQF5015_04924
Genome Viewer
NA
AA
1053/351
170243-171295
Inner membrane protein YhiM
SEQF5015|JADGKR010000009.1
SEQF5015_04923
Genome Viewer
NA
AA
1239/413
169859-168621
hypothetical protein
SEQF5015|JADGKR010000009.1
SEQF5015_04922
Genome Viewer
NA
AA
354/118
168624-168271
hypothetical protein
SEQF5015|JADGKR010000009.1
SEQF5015_04921
Genome Viewer
NA
AA
1623/541
168009-166387
hypothetical protein
SEQF5015|JADGKR010000009.1
SEQF5015_04920
Genome Viewer
NA
AA
1068/356
166021-164954
hypothetical protein
SEQF5015|JADGKR010000009.1
SEQF5015_04919
Genome Viewer
NA
AA
2736/912
164957-162222
Ribosome-associated ATPase
SEQF5015|JADGKR010000009.1
SEQF5015_04918
Genome Viewer
NA
AA
1125/375
162222-161098
Inner membrane transport permease YhhJ
SEQF5015|JADGKR010000009.1
SEQF5015_04917
Genome Viewer
NA
AA
168/56
161025-160858
hypothetical protein
SEQF5015|JADGKR010000009.1
SEQF5015_04916
Genome Viewer
NA
AA
360/120
160754-160395
hypothetical protein
SEQF5015|JADGKR010000009.1
SEQF5015_04915
Genome Viewer
NA
AA
861/287
159485-160345
D-tagatose-1%2C6-bisphosphate aldolase subunit KbaY
SEQF5015|JADGKR010000009.1
SEQF5015_04914
Genome Viewer
NA
AA
270/90
159184-159453
HPr-like protein Crh
SEQF5015|JADGKR010000009.1
SEQF5015_04913
Genome Viewer
NA
AA
1509/503
157686-159194
Xylulose kinase
SEQF5015|JADGKR010000009.1
SEQF5015_04912
Genome Viewer
NA
AA
1359/453
156335-157693
PTS system galactitol-specific EIIC component
SEQF5015|JADGKR010000009.1
SEQF5015_04911
Genome Viewer
NA
AA
282/94
155977-156258
PTS system galactitol-specific EIIB component
SEQF5015|JADGKR010000009.1
SEQF5015_04910
Genome Viewer
NA
AA
474/158
155507-155980
hypothetical protein
SEQF5015|JADGKR010000009.1
SEQF5015_04909
Genome Viewer
NA
AA
747/249
154737-155483
Mannosyl-D-glycerate transport/metabolism system repressor MngR
SEQF5015|JADGKR010000009.1
SEQF5015_04908
Genome Viewer
NA
AA
402/134
154137-154538
Nickel-responsive regulator
SEQF5015|JADGKR010000009.1
SEQF5015_04907
Genome Viewer
NA
AA
807/269
153325-154131
Nickel import ATP-binding protein NikE
Items 1 - 20
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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